make test fail of gyre-5.2.tar.gz package

[cdd]

I download gyre-5.2.tar.gz package with mesasdk-x86_64-linux-20190503.tar.gz installed. Gyre has been successfully installed in bin directory and when i want to make test, it gives below error message:

make[1]: Entering directory '/home/ubuntu64/software/gyre/test'
make[2]: Entering directory '/home/ubuntu64/software/gyre/test/ad'
make[3]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/omp'
TEST numerics (OpenMP)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/omp'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/band'
TEST numerics (band matrix)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/band'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/delta'
TEST numerics (*_DELTA frequency units)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/delta'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/doppler'
TEST numerics (rotation, Doppler shift)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/doppler'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/tar'
TEST numerics (rotation, traditional approximation)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/tar'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/cowling'
TEST numerics (Cowling approximation)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/cowling'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/vars-dziem'
TEST numerics (DZIEM variables)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/vars-dziem'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/vars-jcd'
TEST numerics (JCD variables)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/vars-jcd'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/vars-mix'
TEST numerics (MIX variables)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/vars-mix'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/vars-lagp'
TEST numerics (LAGP variables)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/vars-lagp'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/hdf'
TEST numerics (HDF5 output)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/hdf'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/diff-colloc'
TEST numerics (Collocation difference schemes)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/diff-colloc'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/diff-magnus'
TEST numerics (Magnus difference schemes)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/diff-magnus'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/diff-mirk'
TEST numerics (MIRK difference schemes)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/diff-mirk'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/diff-trapz'
TEST numerics (Trapezoidal difference scheme)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/diff-trapz'
Makefile:11: recipe for target 'test' failed
make[3]: *** [test] Error 2
make[3]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num'
make[3]: Entering directory '/home/ubuntu64/software/gyre/test/ad/poly'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/poly/0.0'
TEST polytrope model (n_poly=0.0)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/poly/0.0'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/poly/0.0+0.0'
TEST polytrope model (n_poly=0.0 w/ double point)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/poly/0.0+0.0'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/poly/1.5'
TEST polytrope model (n_poly=1.5)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/poly/1.5'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/poly/1.5-no-ctr'
TEST polytrope model (n_poly=1.5, no center)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/poly/1.5-no-ctr'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/poly/3.0'
TEST polytrope model (n_poly=3.0)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/poly/3.0'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/poly/3.0-g'
TEST polytrope model (n_poly=3.0, g modes)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/poly/3.0-g'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/poly/3.0+3.0'
TEST polytrope model (n_poly=3.0 w/ double point)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/poly/3.0+3.0'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/poly/4.0'
TEST polytrope model (n_poly=4.0)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/poly/4.0'
Makefile:11: recipe for target 'test' failed
make[3]: *** [test] Error 2
make[3]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/poly'
make[3]: Entering directory '/home/ubuntu64/software/gyre/test/ad/fgong'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/fgong/solar'
TEST FGONG solar model S...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/fgong/solar'
Makefile:11: recipe for target 'test' failed
make[3]: *** [test] Error 2
make[3]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/fgong'
make[3]: Entering directory '/home/ubuntu64/software/gyre/test/ad/losc'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/losc/rgb'
TEST LOSC RGB model...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/losc/rgb'
Makefile:11: recipe for target 'test' failed
make[3]: *** [test] Error 2
make[3]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/losc'
make[3]: Entering directory '/home/ubuntu64/software/gyre/test/ad/mesa'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/mesa/bcep'
TEST MESA model for beta Cephei star (adiabatic)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/mesa/bcep'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/mesa/spb'
TEST MESA model for slowly pulsating B-type star (adiabatic)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/mesa/spb'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/mesa/spb-qad'
TEST MESA model for slowly pulsating B-type star (adiabatic, quasi-adiabatic eigfuncs)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/mesa/spb-qad'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/mesa/rgb'
TEST MESA model for RGB star (adiabatic)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/mesa/rgb'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/mesa/dcep'
TEST MESA model for delta Cephei star (adiabatic)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/mesa/dcep'
Makefile:11: recipe for target 'test' failed
make[3]: *** [test] Error 2
make[3]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/mesa'
Makefile:11: recipe for target 'test' failed
make[2]: *** [test] Error 2
make[2]: Leaving directory '/home/ubuntu64/software/gyre/test/ad'
make[2]: Entering directory '/home/ubuntu64/software/gyre/test/nad'
make[3]: Entering directory '/home/ubuntu64/software/gyre/test/nad/mesa'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/nad/mesa/bcep'
TEST MESA model for beta Cephei star (non-adiabatic)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/nad/mesa/bcep'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/nad/mesa/spb'
TEST MESA model for slowly pulsating B-type star (non-adiabatic)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/nad/mesa/spb'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/nad/mesa/spb-rossby'
TEST MESA model for slowly pulsating B-type star (non-adiabatic, Rossby modes)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/nad/mesa/spb-rossby'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/nad/mesa/rgb'
TEST MESA model for RGB star (non-adiabatic)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/nad/mesa/rgb'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/nad/mesa/dcep'
TEST MESA model for delta Cephei star (non-adiabatic)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/nad/mesa/dcep'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/nad/mesa/solar'
TEST MESA model for Sun (non-adiabatic, diffusion vs. Eddington approxiation)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/nad/mesa/solar'
Makefile:11: recipe for target 'test' failed
make[3]: *** [test] Error 2
make[3]: Leaving directory '/home/ubuntu64/software/gyre/test/nad/mesa'
Makefile:11: recipe for target 'test' failed
make[2]: *** [test] Error 2
make[2]: Leaving directory '/home/ubuntu64/software/gyre/test/nad'
Makefile:11: recipe for target 'test' failed
make[1]: *** [test] Error 2
make[1]: Leaving directory '/home/ubuntu64/software/gyre/test'
Makefile:15: recipe for target 'test' failed
make: *** [test] Error 2

If i go into /home/ubuntu64/software/gyre/test/ad/num/omp directory and make only one test, it can pass test, i.e., the /bin/gyre program has been successfully produced, but in test.sh and test_support files, the variable EXEC seems to be assigned a absolute directory (EXEC=./gyre) , so when i make test they could not find the gyre executable program. I want to ask whether it is a bug or i have something wrong in my installation?

Chen

[rhtownsend]

Hi Chen --

The ./gyre file in the test directories should be a symbolic link to $GYRE_DIR/bin/gyre.

Can you post the output from 'ls -l $GYRE_DIR/bin', please.

cheers,

Rich

[cdd]

below is the output:

ubuntu64@ubuntu64-virtual-machine:~/software/gyre$ echo $GYRE_DIR
/home/ubuntu64/software/gyre
ubuntu64@ubuntu64-virtual-machine:~/software/gyre$ cd $GYRE_DIR
ubuntu64@ubuntu64-virtual-machine:~/software/gyre$ ls -l $GYRE_DIR/bin
total 2556
-rwxr-xr-x 1 ubuntu64 ubuntu64 1815072 Aug 7 17:48 gyre
-rwxr-xr-x 1 ubuntu64 ubuntu64 796560 Aug 7 17:48 poly_to_fgong

[rhtownsend]

below is the output:

ubuntu64@ubuntu64-virtual-machine:~/software/gyre$ echo $GYRE_DIR
/home/ubuntu64/software/gyre
ubuntu64@ubuntu64-virtual-machine:~/software/gyre$ cd $GYRE_DIR
ubuntu64@ubuntu64-virtual-machine:~/software/gyre$ ls -l $GYRE_DIR/bin
total 2556
-rwxr-xr-x 1 ubuntu64 ubuntu64 1815072 Aug 7 17:48 gyre
-rwxr-xr-x 1 ubuntu64 ubuntu64 796560 Aug 7 17:48 poly_to_fgong

Thanks -- that looks correct. And what happens when you do 'ls -l $GYRE_DIR/test/ad/num/omp' ?

cheers,

Rich

[cdd]

below is the output of this command:

ubuntu64@ubuntu64-virtual-machine:~/software/gyre$ ls -l $GYRE_DIR/test/ad/num/omp
total 24
-rwxrwxrwx 1 ubuntu64 ubuntu64 411 Apr 20 2018 gyre.1.in
-rwxrwxrwx 1 ubuntu64 ubuntu64 412 Apr 20 2018 gyre.n.in
-rwxrwxrwx 1 ubuntu64 ubuntu64 158 Apr 20 2018 Makefile
-rw-r--r-- 1 ubuntu64 ubuntu64 3431 Aug 7 23:04 summary.n.txt
-rwxrwxrwx 1 ubuntu64 ubuntu64 580 Apr 20 2018 test.sh
-rwxrwxrwx 1 ubuntu64 ubuntu64 2126 Aug 7 22:29 test_support

Among them summary.n.txt is the result produced by the absolute directory command. And what i forget to say is that this gyre package is from gyre-5.2-mesa.tar.gz (mesa-r11701.zip), not download directed from your website gyre-5.2.tar.gz. Is there any different between the two and cause the problem?

[cdd]

I try to download gyre-5.2.tar.gz from your website and install it, now everything looks good. So the problem lies in the package from mesa is different from yours. Thank you Rich for your help anyway!

[rhtownsend]

below is the output of this command:

ubuntu64@ubuntu64-virtual-machine:~/software/gyre$ ls -l $GYRE_DIR/test/ad/num/omp
total 24
-rwxrwxrwx 1 ubuntu64 ubuntu64 411 Apr 20 2018 gyre.1.in
-rwxrwxrwx 1 ubuntu64 ubuntu64 412 Apr 20 2018 gyre.n.in
-rwxrwxrwx 1 ubuntu64 ubuntu64 158 Apr 20 2018 Makefile
-rw-r--r-- 1 ubuntu64 ubuntu64 3431 Aug 7 23:04 summary.n.txt
-rwxrwxrwx 1 ubuntu64 ubuntu64 580 Apr 20 2018 test.sh
-rwxrwxrwx 1 ubuntu64 ubuntu64 2126 Aug 7 22:29 test_support

Among them summary.n.txt is the result produced by the absolute directory command. And what i forget to say is that this gyre package is from gyre-5.2-mesa.tar.gz (mesa-r11701.zip), not download directed from your website gyre-5.2.tar.gz. Is there any different between the two and cause the problem?

There are symbolic links missing from that directory -- it should look like this:

total 32
-rwxr-xr-x 1 townsend staff 580 Apr 20 2018 test.sh
-rw-r--r-- 1 townsend staff 412 Apr 20 2018 gyre.n.in
-rw-r--r-- 1 townsend staff 411 Apr 20 2018 gyre.1.in
-rw-r--r-- 1 townsend staff 158 Apr 20 2018 Makefile
lrwxr-xr-x 1 townsend staff 28 Apr 20 2018 test_support -> ../../../common/test_support
lrwxr-xr-x 1 townsend staff 20 Apr 20 2018 gyre -> ../../../../bin/gyre

The permissions on the files are also messed up. Not sure why...

cheers,

Rich