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I download gyre-5.2.tar.gz package with mesasdk-x86_64-linux-20190503.tar.gz installed. Gyre has been successfully installed in bin directory and when i want to make test, it gives below error message:

make[1]: Entering directory '/home/ubuntu64/software/gyre/test'
make[2]: Entering directory '/home/ubuntu64/software/gyre/test/ad'
make[3]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/omp'
TEST numerics (OpenMP)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/omp'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/band'
TEST numerics (band matrix)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/band'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/delta'
TEST numerics (*_DELTA frequency units)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/delta'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/doppler'
TEST numerics (rotation, Doppler shift)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/doppler'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/tar'
TEST numerics (rotation, traditional approximation)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/tar'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/cowling'
TEST numerics (Cowling approximation)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/cowling'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/vars-dziem'
TEST numerics (DZIEM variables)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/vars-dziem'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/vars-jcd'
TEST numerics (JCD variables)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/vars-jcd'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/vars-mix'
TEST numerics (MIX variables)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/vars-mix'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/vars-lagp'
TEST numerics (LAGP variables)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/vars-lagp'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/hdf'
TEST numerics (HDF5 output)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/hdf'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/diff-colloc'
TEST numerics (Collocation difference schemes)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/diff-colloc'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/diff-magnus'
TEST numerics (Magnus difference schemes)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/diff-magnus'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/diff-mirk'
TEST numerics (MIRK difference schemes)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/diff-mirk'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/num/diff-trapz'
TEST numerics (Trapezoidal difference scheme)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num/diff-trapz'
Makefile:11: recipe for target 'test' failed
make[3]: *** [test] Error 2
make[3]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/num'
make[3]: Entering directory '/home/ubuntu64/software/gyre/test/ad/poly'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/poly/0.0'
TEST polytrope model (n_poly=0.0)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/poly/0.0'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/poly/0.0+0.0'
TEST polytrope model (n_poly=0.0 w/ double point)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/poly/0.0+0.0'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/poly/1.5'
TEST polytrope model (n_poly=1.5)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/poly/1.5'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/poly/1.5-no-ctr'
TEST polytrope model (n_poly=1.5, no center)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/poly/1.5-no-ctr'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/poly/3.0'
TEST polytrope model (n_poly=3.0)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/poly/3.0'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/poly/3.0-g'
TEST polytrope model (n_poly=3.0, g modes)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/poly/3.0-g'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/poly/3.0+3.0'
TEST polytrope model (n_poly=3.0 w/ double point)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/poly/3.0+3.0'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/poly/4.0'
TEST polytrope model (n_poly=4.0)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/poly/4.0'
Makefile:11: recipe for target 'test' failed
make[3]: *** [test] Error 2
make[3]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/poly'
make[3]: Entering directory '/home/ubuntu64/software/gyre/test/ad/fgong'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/fgong/solar'
TEST FGONG solar model S...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/fgong/solar'
Makefile:11: recipe for target 'test' failed
make[3]: *** [test] Error 2
make[3]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/fgong'
make[3]: Entering directory '/home/ubuntu64/software/gyre/test/ad/losc'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/losc/rgb'
TEST LOSC RGB model...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/losc/rgb'
Makefile:11: recipe for target 'test' failed
make[3]: *** [test] Error 2
make[3]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/losc'
make[3]: Entering directory '/home/ubuntu64/software/gyre/test/ad/mesa'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/mesa/bcep'
TEST MESA model for beta Cephei star (adiabatic)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/mesa/bcep'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/mesa/spb'
TEST MESA model for slowly pulsating B-type star (adiabatic)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/mesa/spb'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/mesa/spb-qad'
TEST MESA model for slowly pulsating B-type star (adiabatic, quasi-adiabatic eigfuncs)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/mesa/spb-qad'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/mesa/rgb'
TEST MESA model for RGB star (adiabatic)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/mesa/rgb'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/ad/mesa/dcep'
TEST MESA model for delta Cephei star (adiabatic)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/mesa/dcep'
Makefile:11: recipe for target 'test' failed
make[3]: *** [test] Error 2
make[3]: Leaving directory '/home/ubuntu64/software/gyre/test/ad/mesa'
Makefile:11: recipe for target 'test' failed
make[2]: *** [test] Error 2
make[2]: Leaving directory '/home/ubuntu64/software/gyre/test/ad'
make[2]: Entering directory '/home/ubuntu64/software/gyre/test/nad'
make[3]: Entering directory '/home/ubuntu64/software/gyre/test/nad/mesa'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/nad/mesa/bcep'
TEST MESA model for beta Cephei star (non-adiabatic)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/nad/mesa/bcep'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/nad/mesa/spb'
TEST MESA model for slowly pulsating B-type star (non-adiabatic)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/nad/mesa/spb'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/nad/mesa/spb-rossby'
TEST MESA model for slowly pulsating B-type star (non-adiabatic, Rossby modes)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/nad/mesa/spb-rossby'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/nad/mesa/rgb'
TEST MESA model for RGB star (non-adiabatic)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/nad/mesa/rgb'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/nad/mesa/dcep'
TEST MESA model for delta Cephei star (non-adiabatic)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/nad/mesa/dcep'
make[4]: Entering directory '/home/ubuntu64/software/gyre/test/nad/mesa/solar'
TEST MESA model for Sun (non-adiabatic, diffusion vs. Eddington approxiation)...
test_support: line 31: ./gyre: No such file or directory
...failed: ./gyre returned non-zero exit status
Makefile:7: recipe for target 'test' failed
make[4]: *** [test] Error 1
make[4]: Leaving directory '/home/ubuntu64/software/gyre/test/nad/mesa/solar'
Makefile:11: recipe for target 'test' failed
make[3]: *** [test] Error 2
make[3]: Leaving directory '/home/ubuntu64/software/gyre/test/nad/mesa'
Makefile:11: recipe for target 'test' failed
make[2]: *** [test] Error 2
make[2]: Leaving directory '/home/ubuntu64/software/gyre/test/nad'
Makefile:11: recipe for target 'test' failed
make[1]: *** [test] Error 2
make[1]: Leaving directory '/home/ubuntu64/software/gyre/test'
Makefile:15: recipe for target 'test' failed
make: *** [test] Error 2

If i go into /home/ubuntu64/software/gyre/test/ad/num/omp directory and make only one test, it can pass test, i.e., the /bin/gyre program has been successfully produced, but in test.sh and test_support files, the variable EXEC seems to be assigned a absolute directory (EXEC=./gyre) , so when i make test they could not find the gyre executable program. I want to ask whether it is a bug or i have something wrong in my installation?

Chen

Hi Chen --

The ./gyre file in the test directories should be a symbolic link to $GYRE_DIR/bin/gyre.

Can you post the output from 'ls -l $GYRE_DIR/bin', please.

cheers,

Rich

below is the output:

ubuntu64@ubuntu64-virtual-machine:~/software/gyre$ echo $GYRE_DIR
/home/ubuntu64/software/gyre
ubuntu64@ubuntu64-virtual-machine:~/software/gyre$ cd $GYRE_DIR
ubuntu64@ubuntu64-virtual-machine:~/software/gyre$ ls -l $GYRE_DIR/bin
total 2556
-rwxr-xr-x 1 ubuntu64 ubuntu64 1815072 Aug 7 17:48 gyre
-rwxr-xr-x 1 ubuntu64 ubuntu64 796560 Aug 7 17:48 poly_to_fgong

cdd wrote: ↑

Fri Aug 09, 2019 3:26 am

below is the output:

ubuntu64@ubuntu64-virtual-machine:~/software/gyre$ echo $GYRE_DIR
/home/ubuntu64/software/gyre
ubuntu64@ubuntu64-virtual-machine:~/software/gyre$ cd $GYRE_DIR
ubuntu64@ubuntu64-virtual-machine:~/software/gyre$ ls -l $GYRE_DIR/bin
total 2556
-rwxr-xr-x 1 ubuntu64 ubuntu64 1815072 Aug 7 17:48 gyre
-rwxr-xr-x 1 ubuntu64 ubuntu64 796560 Aug 7 17:48 poly_to_fgong

Thanks -- that looks correct. And what happens when you do 'ls -l $GYRE_DIR/test/ad/num/omp' ?

cheers,

Rich

below is the output of this command:

ubuntu64@ubuntu64-virtual-machine:~/software/gyre$ ls -l $GYRE_DIR/test/ad/num/omp
total 24
-rwxrwxrwx 1 ubuntu64 ubuntu64 411 Apr 20 2018 gyre.1.in
-rwxrwxrwx 1 ubuntu64 ubuntu64 412 Apr 20 2018 gyre.n.in
-rwxrwxrwx 1 ubuntu64 ubuntu64 158 Apr 20 2018 Makefile
-rw-r--r-- 1 ubuntu64 ubuntu64 3431 Aug 7 23:04 summary.n.txt
-rwxrwxrwx 1 ubuntu64 ubuntu64 580 Apr 20 2018 test.sh
-rwxrwxrwx 1 ubuntu64 ubuntu64 2126 Aug 7 22:29 test_support

Among them summary.n.txt is the result produced by the absolute directory command. And what i forget to say is that this gyre package is from gyre-5.2-mesa.tar.gz (mesa-r11701.zip), not download directed from your website gyre-5.2.tar.gz. Is there any different between the two and cause the problem?

I try to download gyre-5.2.tar.gz from your website and install it, now everything looks good. So the problem lies in the package from mesa is different from yours. Thank you Rich for your help anyway!

cdd wrote: ↑

Fri Aug 09, 2019 9:53 pm

below is the output of this command:

ubuntu64@ubuntu64-virtual-machine:~/software/gyre$ ls -l $GYRE_DIR/test/ad/num/omp
total 24
-rwxrwxrwx 1 ubuntu64 ubuntu64 411 Apr 20 2018 gyre.1.in
-rwxrwxrwx 1 ubuntu64 ubuntu64 412 Apr 20 2018 gyre.n.in
-rwxrwxrwx 1 ubuntu64 ubuntu64 158 Apr 20 2018 Makefile
-rw-r--r-- 1 ubuntu64 ubuntu64 3431 Aug 7 23:04 summary.n.txt
-rwxrwxrwx 1 ubuntu64 ubuntu64 580 Apr 20 2018 test.sh
-rwxrwxrwx 1 ubuntu64 ubuntu64 2126 Aug 7 22:29 test_support

Among them summary.n.txt is the result produced by the absolute directory command. And what i forget to say is that this gyre package is from gyre-5.2-mesa.tar.gz (mesa-r11701.zip), not download directed from your website gyre-5.2.tar.gz. Is there any different between the two and cause the problem?

There are symbolic links missing from that directory -- it should look like this:

total 32
-rwxr-xr-x 1 townsend staff 580 Apr 20 2018 test.sh
-rw-r--r-- 1 townsend staff 412 Apr 20 2018 gyre.n.in
-rw-r--r-- 1 townsend staff 411 Apr 20 2018 gyre.1.in
-rw-r--r-- 1 townsend staff 158 Apr 20 2018 Makefile
lrwxr-xr-x 1 townsend staff 28 Apr 20 2018 test_support -> ../../../common/test_support
lrwxr-xr-x 1 townsend staff 20 Apr 20 2018 gyre -> ../../../../bin/gyre

The permissions on the files are also messed up. Not sure why...

cheers,

Rich